| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 599 | CAM physiology and transcriptomics in the homoploid hybrid Yucca gloriosa
Log in to add this item to your schedule | Genomics / Proteomics | Heyduk, Karolina; Ray, Jeremy N.; Burrell, Nia; Lalani, Falak; Leebens-Mack, James H.. | Crassulacean acid metabolism
Photosynthesis
transcriptomics
comparative cenomics |
| 166 | Challenges of using transcriptomes for comparative gene family evolution: Examples from Apocynaceae
Log in to add this item to your schedule | Genomics / Proteomics | Straub, Shannon C.K.; Bailey, C. Donovan; Cronn, Richard C.; Fishbein, Mark; Liston, Aaron. | Transcriptome
Asclepias
Apocynaceae
gene family evolution
Comparative Genomics |
| 1174 | Comparative Genomics of CNL Disease Resistance Genes in Six Grass Species
Log in to add this item to your schedule | Genomics / Proteomics | Nepal, Madhav P.; Andersen, Ethan; Shaw, Samantha R.; Gonzalez, Jose L.; Yen, Yang; Reese, R. Neil. | CNL Genes
Disease Resistance
NB-ARC
Grass Genomes
NBS-LRR
gene duplication
Ks Values |
| 1005 | Comparative transcriptomics of two closely related grapevine species (Vitis riparia and V. rupestris)
Log in to add this item to your schedule | Genomics / Proteomics | Miller, Allison. | transcriptomics
grapevine
natural variation
common garden
adaptation
Abiotic stress |
| 1376 | Cryptic Diversity in the Cryptococcus gattii Genome Revealed through Population-Level Sequencing
Log in to add this item to your schedule | Genomics / Proteomics | Steenwyk, Jacob; Gibbons, John. | genomics
population variation
genetic variation
Pathogenicity
Fungi |
| 1321 | Dual RNA-Seq transcriptome profiling of canola (Brassica napus L.) and Sclerotinia sclerotiorum during a compatible interaction
Log in to add this item to your schedule | Genomics / Proteomics | Joshi, Raj Kumar; Megha, Swati; Rahman, Muhammad Hafiz; Basu, Urmila; Kav, Nat N. V.. | RNA-Seq
Sclerotinia sclerotiorum
Canola
transcriptomics |
| 91 | Early flowering soybean: the art of mixing plant breeding, molecular biology and bioinformatics
Log in to add this item to your schedule | Genomics / Proteomics | Samanfar, Bahram; Charette, Martin; Cober, Elroy; Molnar, Stephen. | Soybean
Early maturity
Flowering
E10
SSR
SNP
Bioinformatics
PPI
PIPE
Functional genomics
genomics |
| 615 | Evaluating evidence for ancient Whole Genome Duplications from Synonymous Substitution Rates
Log in to add this item to your schedule | Genomics / Proteomics | Tiley, George; Burleigh, Gordon. | gene family evolution
gene duplication
synonymous substitution rates
whole genome duplication |
| 1075 | Evolution and development of storage roots in morning glories
Log in to add this item to your schedule | Genomics / Proteomics | Eserman, Lauren; Leebens-Mack, James H.. | morning glories
storage root
root anatomy
transcriptomics
RNA Sequencing |
| 178 | Examination of clock related post-translational protein regulation through quantitative proteomics
Log in to add this item to your schedule | Genomics / Proteomics | Uhrig, R. Glen; Echevarría-Zomeño, Sira; Grossmann, Jonas; Roschitzki, Bernd; Gruissem, Wilhelm. | Proteomics
Phosphorylation
Arabidopsis
Mass Spectrometry
Circadian Clock |
| 992 | Genome-wide analysis of known and potential cis-regulatory elements in promoter regions of the grapevine (Vitis vinifera L.) genome
Log in to add this item to your schedule | Genomics / Proteomics | Wong, Darren C. J.; Gambetta, Greg; Castellarin, Simone Diego. | Gene regulation
Fruit
transcriptomics
Ripening
water deficit |
| 974 | Genome Sequence for OAC Rex, a Dry Bean (Phaseolus vulgaris) Line with Common Bacterial Blight Resistance Introgressed from Phaseolus acutifolius
Log in to add this item to your schedule | Genomics / Proteomics | Perry, Gregory; Dinatalle, D; Xie, Weilong; Munholland, Seth; Crosby, William L.; Pauls, Karl Peter. | Phaseolus vulgaris
genomes
bacterial disease
Disease Resistance Genes
introgression |
| 930 | Genomic dissection of an important malting quality QTL in barley
Log in to add this item to your schedule | Genomics / Proteomics | Singh, Surinder; Singh, Jaswinder. | genomics
barley
Malting
Functional genomics
Molecular genetics
Transposon
Cereals
quality
breeding |
| 88 | Genomic Investigation of the Aspergillus nomius Type Strain
Log in to add this item to your schedule | Genomics / Proteomics | Moore, Geromy G.; Mack, Brian M.; Beltz, Shannon B.. | Aspergillus nomius
genomics
Gene ontology
phylogenomics
Mating-type idiomorph |
| 313 | Genomic perspective of variation in Phytophthora ramorum virulence
Log in to add this item to your schedule | Genomics / Proteomics | Hammett, Craig; Shamoun, Simon Francis; Hamelin, Richard C.. | Sudden Oak Death
Phytophthora ramorum
genomics
NA1 lineage
Phenotype
Wild and non-wild isolates
virulence |
| 633 | Heterogeneity in loss rates following whole genome duplication across land plants
Log in to add this item to your schedule | Genomics / Proteomics | Tiley, George; Ane, Cecile; Burleigh, Gordon. | whole genome duplication
gene family evolution
gene duplication |
| 961 | Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Weitemier, Kevin; Straub, Shannon C.K.; Fishbein, Mark; Liston, Aaron. | Asclepias
Concerted evolution
Genome skimming
High-copy
Intragenomic polymorphism
Partial SNP (pSNP)
nuclear ribosomal DNA
nrDNA
Intra-individual site polymorphism
2ISP
ITS |
| 1315 | Investigation of gene expression in Arceuthobium spp. during the explosive seed dispersal with special attention to aquaporins
Log in to add this item to your schedule | Genomics / Proteomics | Urban, Joanna; Ross Friedman, Cynthia; Kaldenhoff, Ralf; Bouditchevskaia, Anastassia. | Arceuthobium spp
Microarray
seed dispersal
aquaporins
Affymetrix |
| 778 | Not all magnoliid genomes are “fossils.”
Log in to add this item to your schedule | Genomics / Proteomics | Sinn, Brandon T.; Sedmak, Dylan; Kelly, Lawrence; Freudenstein, John. | Asarum
Saruma
Magnoliid
mitochondrion
mitochondrial genome |
| 108 | Overexpression of miR156 affects forage yield and other traits in alfalfa by regulating SPL genes
Log in to add this item to your schedule | Genomics / Proteomics | Hannoufa, Abdelali; Gruber, Margaret; Aung, Banyar; Bertrand, Annick; Amyot, Lisa; Omari, Khalid. | Forage
microRNA
gene expression
Biomass yield and quality |
| 1288 | Phenotypic and genotypic correlations of wood ultrastructure traits and lignin composition on Populus trichocarpa
Log in to add this item to your schedule | Genomics / Proteomics | Unda, Faride; Skyba, Alex; Klapste, Jaroslav; Araujo, Francis; Hart, Foster; Guy, Robert; Douglas, Carl J.; Mansfield, Shawn. | wood traits |
| 1012 | Production of a complete library of the plastid derived transcipts of Karenia brevis and phylogenetic analysis of 6 proteins adds to the complex story of dinoflagellate endosymbiosis
Log in to add this item to your schedule | Genomics / Proteomics | Cahoon, Aubrey Bruce; Carroll, Hyrum; Wang, Matthew Yu-Wei; Newby, Robert J.; Al-Tobasei, Rafet Faeq; Ewool, Richard C.; Evangelista, Delio; Stanley, Conner D.; Leblond, Jeffrey. | plastid
Transcriptome
algae
Dinoflagellate |
| 836 | Quantifying transcriptome-wide levels of gene expression following autopolyploidy in Tolmiea (Saxifragaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Visger, Clayton; Wong, Gane Ka-Shu; Soltis, Pamela S.; Soltis, Douglas. | Polyploidy
autopolyploidy
gene expression
RNA-Seq |
| 890 | Redox regulation of seed dormancy release in spring wheat revealed through tissue-specific proteomics, metabolomics and antioxidant activity profiling
Log in to add this item to your schedule | Genomics / Proteomics | Hu, Junjie (Grace); Radovanovic, Natasa; Fan, Tao; Bykova, Natalia. | Dormancy
After-ripening
Oxidative stress
Metabolomics
Tissue-specific proteomics
Redox proteomics
embryo
Aleurone layer
Spring wheat
nano-LC-MS/MS
Two dimensional (2D)IEF/SDS PAGE |
| 866 | Regulation of Isoflavonoid Biosynthesis and GmMYB176 interactome in soybean
Log in to add this item to your schedule | Genomics / Proteomics | Anguraj Vadivel, Arun Kumaran; Dhaubhadel, Sangeeta. | Co-immunoprecipitation
Transcriptional regulation
protein protein interactions
Mass Spectrometry
Isoflavonoid
Biosynthetic pathway regulation |
| 1310 | Simple Synteny: An accessible tool for comparisons of genomic regions
Log in to add this item to your schedule | Genomics / Proteomics | Veltri, Daniel; Malapi-Wight, Martha; Crouch, Jo Anne. | Comparative Genomics
Bioinformatics
Fungi
syntenic analysis
Calonectria
Colletotrichum |
| 1029 | The miR156/SPL network determine floral organ development and plant fertility by regulating AS2 gene
Log in to add this item to your schedule | Genomics / Proteomics | Wang, Zhishuo; Wang, Ying; Kohalmi, Susanne; Amyot, Lisa; Hannoufa, Abdelali. | silique
fertility
miR156
SPL2
AS2 |
| 942 | Tracking Disease Resistance in Wheat through Identification of R-gene Orthologs in Aegilops tauschii Coss. (Poaceae)
Log in to add this item to your schedule | Genomics / Proteomics | Nepal, Madhav P.; Shaw, Samantha R.; Andersen, Ethan. | Disease Resistance Genes
CNL Genes
Wheat D genome
gene duplication |
| 571 | Transcriptome analysis of Leptosphaeria maculans
Log in to add this item to your schedule | Genomics / Proteomics | El-mezawy, Aliaa; Vidmar, John; Lange, Ralph. | Blackleg
Transcriptome
Leptosphaeria maculans
RNAi |
| 65 | Transcriptome profiling of Amaranthus hypochondriacus.
Log in to add this item to your schedule | Genomics / Proteomics | Adhikary, Dinesh; Deyholos, Michael. | Transcriptome
Amaranthus |
| 164 | Transcriptome profiling reveals whitebark pine genetic diversity for resistance to white pine blister rust
Log in to add this item to your schedule | Genomics / Proteomics | Liu, Jun-jun; Sniezko, Richard; Murray, Michael; Wang, Ning; Sturrock, Rona; Zamany, Arezoo; Kegley, Angelia; Savin, Douglas. | Genetic resistance
RNA-Seq
Transcriptome
SNP genotyping
whitebark pine
white pine blister rust |
| 847 | Transcriptomic and genomic investigations of the homosporous fern, Ceratopteris richardii
Log in to add this item to your schedule | Genomics / Proteomics | Marchant, Blaine; Sessa, Emily Butler; Heo, Kweon; Soltis, Pamela S.; Soltis, Douglas E.. | fern
Polyploidy
transcriptomics
genomics |
| 625 | Transposable elements of Agavoideae
Log in to add this item to your schedule | Genomics / Proteomics | Hertweck, Kate L.; Bousios, Alexandros; McKain, Michael. | transposable elements
Comparative Genomics
Agave
asparagales
monocots
repetitive sequences |
| 200 | UGT74S1 Is a Single-Copy Gene and Is Unique In Controlling Secoisolariciresinol Diglucoside (SDG) Formation In Flax (Linum usitatissimum)
Log in to add this item to your schedule | Genomics / Proteomics | Fofana, Bourlaye; Ghose, Kaushik; McCallum, Jason; You, Frank M.; Cloutier, Sylvie J.. | Flax
SDG
UGT74S1
gene family evolution
gene expression
Enzyme activity |
| 1361 | Unraveling the Transcriptome of the Moringa oleifera Lam. Mature Embryo Using Direct RNA-Sequencing
Log in to add this item to your schedule | Genomics / Proteomics | Panes, Vivian. | Transcriptome
Moringa
embryo
RNA-Seq |
| 598 | Use of NGS and Phenotyping for Developing EMS-Mutagenized Pre-breeding Potato lines Potentially Low in Anti-nutritional Factors
Log in to add this item to your schedule | Genomics / Proteomics | Somalraju, Ashok; Alkhnajari, Aisha; Ghose, Kaushik; Main, David; Fofana, Bourlaye. | Pre-breeding Potato lines
EMS-Mutagenesis
Anti-nutrients
next generation sequencing
Phenotyping
Steroidal Glycoalkaloids
Acrylamide
Single nucleotide polymorphism
SGT1, SGT2, AS1 and AS2 |
| 1343 | Using a hypomethylated population of strawberry to demonstrate that epigenetic variation can be subject to selection
Log in to add this item to your schedule | Genomics / Proteomics | Xu, Jihua; Robinson, Steve; Tanino, Karen. | Strawberry
epigenetic
flowering time
DNA methylation
inheritance |
