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Participating Societies

American Bryological and Lichenological Society (ABLS)
American Fern Society (AFS)
American Society of Plant Taxonomists (ASPT)
Botanical Society of America (BSA)
Botanical Society of France
Canadian Botanical Society (CBA)
Canadian Phytopathological Society (CPS)
Canadian Society of Agronomy (CSA)
Canadian Society of Horticultural Science (CSHS)
Canadian Society of Plant Biologists (CSPB)
Conference Wide
International Association for Plant Taxonomy (IAPT)
Plant Canada (PC)
Mycological Society of America/Mycological Section (MSA)

Presentations for Program:: Genomics / Proteomics

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SessionDate/TimeLocationTitleTypeAuthorsKeywords

Monday, July 27th

Monday, July 27th, 5:30 pm to 7:00 pm · Hall D/The Shaw Conference Centre
Session P: Contributed Posters: Genomics/Proteomics Posters
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PGP001July 27th 5:30 pmHall D/The Shaw Conference CentreGenomic Investigation of the Aspergillus nomius Type Strain
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Poster: Genomics / ProteomicsMoore, Geromy G.; Mack, Brian M.; Beltz, Shannon B..Aspergillus nomius
genomics
Gene ontology
phylogenomics
Mating-type idiomorph
PGP002July 27th 5:30 pmHall D/The Shaw Conference CentreUGT74S1 Is a Single-Copy Gene and Is Unique In Controlling Secoisolariciresinol Diglucoside (SDG) Formation In Flax (Linum usitatissimum)
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Poster: Genomics / ProteomicsFofana, Bourlaye; Ghose, Kaushik; McCallum, Jason; You, Frank M.; Cloutier, Sylvie J..Flax
SDG
UGT74S1
gene family evolution
gene expression
Enzyme activity
PGP003July 27th 5:30 pmHall D/The Shaw Conference CentreGenomic perspective of variation in Phytophthora ramorum virulence
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Poster: Genomics / ProteomicsHammett, Craig; Shamoun, Simon Francis; Hamelin, Richard C..Sudden Oak Death
Phytophthora ramorum
genomics
NA1 lineage
Phenotype
Wild and non-wild isolates
virulence
PGP004July 27th 5:30 pmHall D/The Shaw Conference CentreTranscriptome analysis of Leptosphaeria maculans
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Poster: Genomics / ProteomicsEl-mezawy, Aliaa; Vidmar, John; Lange, Ralph.Blackleg
Transcriptome
Leptosphaeria maculans
RNAi
PGP005July 27th 5:30 pmHall D/The Shaw Conference CentreUse of NGS and Phenotyping for Developing EMS-Mutagenized Pre-breeding Potato lines Potentially Low in Anti-nutritional Factors
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Poster: Genomics / ProteomicsSomalraju, Ashok; Alkhnajari, Aisha; Ghose, Kaushik; Main, David; Fofana, Bourlaye.Pre-breeding Potato lines
EMS-Mutagenesis
Anti-nutrients
next generation sequencing
Phenotyping
Steroidal Glycoalkaloids
Acrylamide
Single nucleotide polymorphism
SGT1, SGT2, AS1 and AS2
PGP006July 27th 5:30 pmHall D/The Shaw Conference CentreHeterogeneity in loss rates following whole genome duplication across land plants
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Poster: Genomics / ProteomicsTiley, George; Ane, Cecile; Burleigh, Gordon.whole genome duplication
gene family evolution
gene duplication
PGP007July 27th 5:30 pmHall D/The Shaw Conference CentreRedox regulation of seed dormancy release in spring wheat revealed through tissue-specific proteomics, metabolomics and antioxidant activity profiling
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Poster: Genomics / ProteomicsHu, Junjie (Grace); Radovanovic, Natasa; Fan, Tao; Bykova, Natalia.Dormancy
After-ripening
Oxidative stress
Metabolomics
Tissue-specific proteomics
Redox proteomics
embryo
Aleurone layer
Spring wheat
nano-LC-MS/MS
Two dimensional (2D)IEF/SDS PAGE
PGP008July 27th 5:30 pmHall D/The Shaw Conference CentreTracking Disease Resistance in Wheat through Identification of R-gene Orthologs in Aegilops tauschii Coss. (Poaceae)
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Poster: Genomics / ProteomicsNepal, Madhav P.; Shaw, Samantha R.; Andersen, Ethan.Disease Resistance Genes
CNL Genes
Wheat D genome
gene duplication
PGP009July 27th 5:30 pmHall D/The Shaw Conference CentreGenome-wide analysis of known and potential cis-regulatory elements in promoter regions of the grapevine (Vitis vinifera L.) genome
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Poster: Genomics / ProteomicsWong, Darren C. J.; Gambetta, Greg; Castellarin, Simone Diego.Gene regulation
Fruit
transcriptomics
Ripening
water deficit
PGP010July 27th 5:30 pmHall D/The Shaw Conference CentreProduction of a complete library of the plastid derived transcipts of Karenia brevis and phylogenetic analysis of 6 proteins adds to the complex story of dinoflagellate endosymbiosis
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Poster: Genomics / ProteomicsCahoon, Aubrey Bruce; Carroll, Hyrum; Wang, Matthew Yu-Wei; Newby, Robert J.; Al-Tobasei, Rafet Faeq; Ewool, Richard C.; Evangelista, Delio; Stanley, Conner D.; Leblond, Jeffrey.plastid
Transcriptome
algae
Dinoflagellate
PGP011July 27th 5:30 pmHall D/The Shaw Conference CentreThe miR156/SPL network determine floral organ development and plant fertility by regulating AS2 gene
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Poster: Genomics / ProteomicsWang, Zhishuo; Wang, Ying; Kohalmi, Susanne; Amyot, Lisa; Hannoufa, Abdelali.silique
fertility
miR156
SPL2
AS2
PGP012July 27th 5:45 pmHall D/The Shaw Conference CentreComparative Genomics of CNL Disease Resistance Genes in Six Grass Species
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Poster: Genomics / ProteomicsNepal, Madhav P.; Andersen, Ethan; Shaw, Samantha R.; Gonzalez, Jose L.; Yen, Yang; Reese, R. Neil.CNL Genes
Disease Resistance
NB-ARC
Grass Genomes
NBS-LRR
gene duplication
Ks Values
PGP013July 27th 5:45 pmHall D/The Shaw Conference CentrePhenotypic and genotypic correlations of wood ultrastructure traits and lignin composition on Populus trichocarpa
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Poster: Genomics / ProteomicsUnda, Faride; Skyba, Alex; Klapste, Jaroslav; Araujo, Francis; Hart, Foster; Guy, Robert; Douglas, Carl J.; Mansfield, Shawn.wood traits
PGP014July 27th 5:45 pmHall D/The Shaw Conference CentreSimple Synteny: An accessible tool for comparisons of genomic regions
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Poster: Genomics / ProteomicsVeltri, Daniel; Malapi-Wight, Martha; Crouch, Jo Anne.Comparative Genomics
Bioinformatics
Fungi
syntenic analysis
Calonectria
Colletotrichum
PGP015July 27th 5:45 pmHall D/The Shaw Conference CentreInvestigation of gene expression in Arceuthobium spp. during the explosive seed dispersal with special attention to aquaporins
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Poster: Genomics / ProteomicsUrban, Joanna; Ross Friedman, Cynthia; Kaldenhoff, Ralf; Bouditchevskaia, Anastassia.Arceuthobium spp
Microarray
seed dispersal
aquaporins
Affymetrix
PGP016July 27th 5:45 pmHall D/The Shaw Conference CentreDual RNA-Seq transcriptome profiling of canola (Brassica napus L.) and Sclerotinia sclerotiorum during a compatible interaction
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Poster: Genomics / ProteomicsJoshi, Raj Kumar; Megha, Swati; Rahman, Muhammad Hafiz; Basu, Urmila; Kav, Nat N. V..RNA-Seq
Sclerotinia sclerotiorum 
Canola
transcriptomics
PGP017July 27th 5:45 pmHall D/The Shaw Conference CentreUnraveling the Transcriptome of the Moringa oleifera Lam. Mature Embryo Using Direct RNA-Sequencing
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Poster: Genomics / ProteomicsPanes, Vivian.Transcriptome
Moringa
embryo
RNA-Seq

Tuesday, July 28th

Tuesday, July 28th, 9:00 am to 12:00 pm · Salon 19/20/The Shaw Conference Centre
Session 39: Contributed Papers: Genomics/Proteomics I
Presiding: Shannon C.K. Straub, Hobart and William Smith Colleges; John Gibbons, Clark University
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39001July 28th 9:00 amSalon 19/20/The Shaw Conference CentreChallenges of using transcriptomes for comparative gene family evolution: Examples from Apocynaceae
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Oral PaperStraub, Shannon C.K.; Bailey, C. Donovan; Cronn, Richard C.; Fishbein, Mark; Liston, Aaron.Transcriptome
Asclepias
Apocynaceae
gene family evolution
Comparative Genomics
39002July 28th 9:15 amSalon 19/20/The Shaw Conference CentreTranscriptomic and genomic investigations of the homosporous fern, Ceratopteris richardii
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Oral PaperMarchant, Blaine; Sessa, Emily Butler; Heo, Kweon; Soltis, Pamela S.; Soltis, Douglas E..fern
Polyploidy
transcriptomics
genomics
39003July 28th 9:30 amSalon 19/20/The Shaw Conference CentreCAM physiology and transcriptomics in the homoploid hybrid Yucca gloriosa
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Oral PaperHeyduk, Karolina; Ray, Jeremy N.; Burrell, Nia; Lalani, Falak; Leebens-Mack, James H..Crassulacean acid metabolism
Photosynthesis
transcriptomics
comparative cenomics
39004July 28th 9:45 amSalon 19/20/The Shaw Conference CentreTransposable elements of Agavoideae
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Oral PaperHertweck, Kate L.; Bousios, Alexandros; McKain, Michael.transposable elements
Comparative Genomics
Agave
asparagales
monocots
repetitive sequences
July 28th 10:00 amSalon 19/20/The Shaw Conference CentreBreak
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39006July 28th 10:30 amSalon 19/20/The Shaw Conference CentreCryptic Diversity in the Cryptococcus gattii Genome Revealed through Population-Level Sequencing
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Oral PaperSteenwyk, Jacob; Gibbons, John.genomics
population variation
genetic variation
Pathogenicity
Fungi
39007July 28th 10:45 amSalon 19/20/The Shaw Conference CentreIntragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)
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Oral PaperWeitemier, Kevin; Straub, Shannon C.K.; Fishbein, Mark; Liston, Aaron.Asclepias
Concerted evolution
Genome skimming
High-copy
Intragenomic polymorphism
Partial SNP (pSNP)
nuclear ribosomal DNA
nrDNA
Intra-individual site polymorphism
2ISP
ITS
39008July 28th 11:00 amSalon 19/20/The Shaw Conference CentreQuantifying transcriptome-wide levels of gene expression following autopolyploidy in Tolmiea (Saxifragaceae)
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Oral PaperVisger, Clayton; Wong, Gane Ka-Shu; Soltis, Pamela S.; Soltis, Douglas.Polyploidy
autopolyploidy
gene expression
RNA-Seq
39009July 28th 11:15 amSalon 19/20/The Shaw Conference CentreEvolution and development of storage roots in morning glories
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Oral PaperEserman, Lauren; Leebens-Mack, James H..morning glories
storage root
root anatomy
transcriptomics
RNA Sequencing
39010July 28th 11:30 amSalon 19/20/The Shaw Conference CentreNot all magnoliid genomes are “fossils.”
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Oral PaperSinn, Brandon T.; Sedmak, Dylan; Kelly, Lawrence; Freudenstein, John.Asarum
Saruma
Magnoliid
mitochondrion
mitochondrial genome
Tuesday, July 28th, 1:30 pm to 5:00 pm · Salon 19/20/The Shaw Conference Centre
Session 48: Contributed Papers: Genomics/Proteomics II
Presiding: Bahram Samanfar, Agriculture and Agri-Food Canada
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48001July 28th 1:30 pmSalon 19/20/The Shaw Conference CentreEarly flowering soybean: the art of mixing plant breeding, molecular biology and bioinformatics
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Oral PaperSamanfar, Bahram; Charette, Martin; Cober, Elroy; Molnar, Stephen.Soybean
Early maturity
Flowering
E10
SSR
SNP
Bioinformatics
PPI
PIPE
Functional genomics
genomics
48002July 28th 1:45 pmSalon 19/20/The Shaw Conference CentreRegulation of Isoflavonoid Biosynthesis and GmMYB176 interactome in soybean
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Oral PaperAnguraj Vadivel, Arun Kumaran; Dhaubhadel, Sangeeta.Co-immunoprecipitation
Transcriptional regulation
protein protein interactions
Mass Spectrometry
Isoflavonoid
Biosynthetic pathway regulation
48003July 28th 2:00 pmSalon 19/20/The Shaw Conference CentreOverexpression of miR156 affects forage yield and other traits in alfalfa by regulating SPL genes
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Oral PaperHannoufa, Abdelali; Gruber, Margaret; Aung, Banyar; Bertrand, Annick; Amyot, Lisa; Omari, Khalid.Forage
microRNA
gene expression
Biomass yield and quality
48004July 28th 2:15 pmSalon 19/20/The Shaw Conference CentreGenome Sequence for OAC Rex, a Dry Bean (Phaseolus vulgaris) Line with Common Bacterial Blight Resistance Introgressed from Phaseolus acutifolius
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Oral PaperPerry, Gregory; Dinatalle, D; Xie, Weilong; Munholland, Seth; Crosby, William L.; Pauls, Karl Peter.Phaseolus vulgaris
genomes
bacterial disease
Disease Resistance Genes
introgression
48005July 28th 2:30 pmSalon 19/20/The Shaw Conference CentreEvaluating evidence for ancient Whole Genome Duplications from Synonymous Substitution Rates
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Oral PaperTiley, George; Burleigh, Gordon.gene family evolution
gene duplication
synonymous substitution rates
whole genome duplication
48006July 28th 2:45 pmSalon 19/20/The Shaw Conference CentreExamination of clock related post-translational protein regulation through quantitative proteomics
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Oral PaperUhrig, R. Glen; Echevarría-Zomeño, Sira; Grossmann, Jonas; Roschitzki, Bernd; Gruissem, Wilhelm.Proteomics
Phosphorylation
Arabidopsis
Mass Spectrometry
Circadian Clock
48007July 28th 3:00 pmSalon 19/20/The Shaw Conference CentreUsing a hypomethylated population of strawberry to demonstrate that epigenetic variation can be subject to selection
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Oral PaperXu, Jihua; Robinson, Steve; Tanino, Karen.Strawberry
epigenetic
flowering time
DNA methylation
inheritance
July 28th 3:15 pmSalon 19/20/The Shaw Conference CentreBreak
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48009July 28th 3:45 pmSalon 19/20/The Shaw Conference CentreGenomic dissection of an important malting quality QTL in barley
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Oral PaperSingh, Surinder; Singh, Jaswinder.genomics
barley
Malting
Functional genomics
Molecular genetics
Transposon
Cereals
quality
breeding
48010July 28th 4:00 pmSalon 19/20/The Shaw Conference CentreTranscriptome profiling reveals whitebark pine genetic diversity for resistance to white pine blister rust
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Oral PaperLiu, Jun-jun; Sniezko, Richard; Murray, Michael; Wang, Ning; Sturrock, Rona; Zamany, Arezoo; Kegley, Angelia; Savin, Douglas.Genetic resistance
RNA-Seq
Transcriptome
SNP genotyping
whitebark pine
white pine blister rust
48011July 28th 4:15 pmSalon 19/20/The Shaw Conference CentreTranscriptome profiling of Amaranthus hypochondriacus.
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Oral PaperAdhikary, Dinesh; Deyholos, Michael.Transcriptome
Amaranthus 
48012July 28th 4:30 pmSalon 19/20/The Shaw Conference CentreComparative transcriptomics of two closely related grapevine species (Vitis riparia and V. rupestris)
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Oral PaperMiller, Allison.transcriptomics
grapevine
natural variation
common garden
adaptation
Abiotic stress

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