| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 449 | Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species
Log in to add this item to your schedule | Phylogenomics | Roncal, Julissa; Guyot, Romain; Hamon, Perla; Nowak, Michael D.; Davis, Aaron; DeKochko, Alexandre. | Madagascar
LTR retrotransposons
Diversification
Coffea canephora
Mascarocoffea
REMAP |
| 1305 | A phylogeny of the world’s oaks
Log in to add this item to your schedule | Phylogenomics | Hipp, Andrew L.; Manos, Paul; McVay, John D.; Cavender-Bares, Jeannine; Gonzalez Rodriguez, Antonio; Romero-Severson, Jeanne; Hahn, Marlene; Brown, Bethany H.; Budaitis, Breane; Deng, Min; Grimm, Guido; Fitzek, Elisabeth; Cronn, Richard C.; Jennings, Tara L.; Avishai, Michael; Simeone, Marco C.. | AFLP
Cyclobalanopsis
Fagaceae
next-generation sequencing
phylogenomics
Quercus
RADseq
restriction site associated DNA |
| 628 | Assessing allelic diversity in polyploid complexes of Phlox (Polemoniaceae) using next-generation amplicon sequencing
Log in to add this item to your schedule | Phylogenomics | Waselkov, Katherine; Fehlberg, Shannon D.; Prather, L. Alan; Wright, Bethany; Ferguson, Carolyn J.. | amplicon
hybridization
next generation sequencing
Phlox
Polemoniaceae
Polyploidy |
| 1100 | Comparative analysis of plastid genomes of Orobanchaceae – adding up species from Korea
Log in to add this item to your schedule | Phylogenomics | Won, Hyosig; Lee, Jungho; Kim, Kyunghee; Yang, Tae-Jin; Kim, Soonok. | Comparative Genomics
plastid genome
parasitic plant
Orobanchaceae |
| 619 | Creating an Updatable Community Resource for Chloroplast Phylogenomics
Log in to add this item to your schedule | Phylogenomics | Payton, Adam; Burleigh, Gordon. | Phylogenetics
chloroplast |
| 865 | Evolution of adaptations to drought, with an emphasis on photosynthetic physiology in Anacampseros (Anacampserotaceae, Caryophyllales) using targeted sequence capture
Log in to add this item to your schedule | Phylogenomics | Moore, Abigail J.; de Vos, Jurriaan M.; Edwards, Erika J.. | Portulacineae
CAM
Anacampserotaceae
Sequence capture |
| 799 | Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea, Cactaceae)
Log in to add this item to your schedule | Phylogenomics | Sanderson, Michael; Copetti, Dario; Burquez, Alberto; Bustamante, Enriquena; Charboneau, Joseph; Eguiarte, Luis E.; Kumar, Sudhir; McMahon, Michelle; Steele, Kelly; Wing, Rod; Yang, Tae-Jin; Lee, Hyun Oh; Lee, Junki; Zwickl, Derrick; Wojciechowski, Martin. | plastid genome
Cactaceae
phylogenomics |
| 544 | Genealogical concordance in Adansonia (Malvaceae) as inferred from hyb-seq data
Log in to add this item to your schedule | Phylogenomics | Baum, David A.; Grover, Corrinne E.; Karimi, Nisa; Stenz, Noah; Gallagher, Joseph P.; Wendel, Jonathan. | Sequence capture
genealogical concordance |
| 1151 | Canceled Genome evolution in Parasitaxus usta, a podocarp conifer with a unique form of heterotrophy
Log in to add this item to your schedule | Phylogenomics | Gerelle, Wesley; Lam, Vivienne K.Y.; Wulff, Adrien; Leebens-Mack, James H.; dePamphilis, Claude D.; Wong, Gane Ka-Shu; Graham, Sean W.. | mycoheterotrophy
heterotrophy
Transcriptome
Evolution
1KP
Gene ontology
Conifer |
| 420 | High-throughput sequencing of chloroplast genomes to resolve a rapidly evolving lineage - a case study in Chinese lianoid Gnetum (Gnetales)
Log in to add this item to your schedule | Phylogenomics | Hou, Chen; Saunders, Richard M.K.; Wikström, Niklas; Strijk, Joeri S.; Rydin, Catarina. | High-throughput Sequencing
chloroplast genome
Gnetales
conservation biology |
| 1034 | High quality sequence data from poor quality herbarium DNAs through hybridization-based target enrichment
Log in to add this item to your schedule | Phylogenomics | Villegas-Ramirez, Berenice; Yant, Levi; Xi, Zhenxiang; Webb, Campbell; Mathews, Sarah. | Alangium
species phylogeny
herbarium DNA
Sequence capture |
| 1155 | How Many Plastomes Does it Take to Estimate the Matrilineal Phylogeny of Asclepias?
Log in to add this item to your schedule | Phylogenomics | Fishbein, Mark; Straub, Shannon; Hansen, Kimberley; Cronn, Richard C.; Liston, Aaron. | milkweed
phylogenomics
Apocynaceae
data partition
model selection
classification |
| 1291 | How much plastome data is enough to resolve the backbone of a phylogeny in a rapid radiation of species? The genus Anthurium (Araceae) as a case study
Log in to add this item to your schedule | Phylogenomics | Carlsen, Monica Maria. | Anthurium
Araceae
Genome skimming
High-throughput Sequencing
plastomes
phylogenomics |
| 142 | Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently-derived insular lineage
Log in to add this item to your schedule | Phylogenomics | Mort, Mark; Crawford, Daniel J.; Kelly, John K.; Santos-Guerra, Arnoldo; Menezes de Sequeira, Miguel; Moura, Mónica; Caujapé-Castells, Juli. | Macaronesia
Asteraceae
genome sequencing
phylogenomics
Tolpis
Canary Islands |
| 274 | Next generation sampling: obtaining genomic data from large sets of herbarium specimens
Log in to add this item to your schedule | Phylogenomics | Beck, James; Semple, John. | Solidago
Species delimitation
phylogenomics
genotyping by sequencing
herbarium specimen |
| 966 | Optimizing RADseq data for deep-scale phylogenomics: an example from Viburnum (Adoxaceae)
Log in to add this item to your schedule | Phylogenomics | Robert Eaton, Deren Alexander; Spriggs, Beth; Park, Brian; Donoghue, Michael. | RADseq
supertree
discordance
Phylogeny
missing data
informativeness |
| 265 | Phylogenomic Approaches in the Genus Heuchera (Saxifragaceae) Elucidate Deep Reticulation and Simultaneous Mitochondrial and Chloroplast Capture
Log in to add this item to your schedule | Phylogenomics | Folk, Ryan; Mandel, Jennifer; Freudenstein, John. | phylogenomics
heuchera
saxifragaceae
hybridization
ancient reticulation
gene tree discord
phylogenomic discord
coalescent
concatenation |
| 1050 | Phylogenomic approach to resolve the genus Pythium and the order Pythiales
Log in to add this item to your schedule | Phylogenomics | Spies, Christoffel F. J.; Morisson, Hannah; Rintoul, Tara L.; Lévesque, C. André. | Oomycetes
Pythium
taxonomy
phytopathology |
| 877 | Phylotranscriptomic insights into the radiation of mosses: gene family expansions and paleopolyploidy
Log in to add this item to your schedule | Phylogenomics | Johnson, Matthew; Wickett, Norm; Medina, Rafael; Liu, Yang; Devos, Nicolas; Shaw, Jonathan; Goffinet, Bernard. | Bryophyte
Transcriptome
gene family
orthologs |
| 1066 | Plastid genome degradation in fully and partially mycoheterotrophic eudicots
Log in to add this item to your schedule | Phylogenomics | Darby, Hayley; Merckx, Vincent S.F.T.; Graham, Sean W.. | plastid genome
genome reduction
gene loss
mycoheterotrophy
heterotrophic plants
Gentianaceae
Polygalaceae |
| 259 | Protocol for Targeted Enrichment of Intron-Containing Sequence Markers for Recent Radiations: A Phylogenomic Example from Heuchera (Saxifragaceae)
Log in to add this item to your schedule | Phylogenomics | Folk, Ryan; Mandel, Jennifer; Freudenstein, John. | phylogenomics
targeted enrichment
probe capture
Rapid radiation
heuchera
saxifragaceae
marker development |
| 473 | RAD-seq strengthens phylogenetic resolution in Schoenoxiphium (Cyperaceae)
Log in to add this item to your schedule | Phylogenomics | Villaverde, Tamara; Maguilla, Enrique; Escudero, Marcial; Martin-Bravo, Santiago; Hipp, Andrew L.; Luceño, Modesto. | RADseq
phylogenomics
Carex
Phylogenetics
next generation sequencing
taxa circumscription
restriction site associated DNA |
| 509 | RADseq phylogeography of Demosthenesia mandonii (Ericaceae:Vaccinieae), a blueberry from the Andean cloud forest
Log in to add this item to your schedule | Phylogenomics | Ortiz, Edgardo M.; Juenger, Thomas; Simspon, Beryl. | Demosthenesia
Demosthenesia mandonii
Vaccinieae
Ericaceae
Phylogeography
RADseq
ddRAD
Pleistocene
cloud forest
Andes
Species Distribution Model |
| 1003 | Research on cytoplasmic genome characterization of chrysanthemum, Pyrus, Allium, and their relatives
Log in to add this item to your schedule | Phylogenomics | Lee, Jungho; Kwon, Mi; Park, Jihye; Lee, Minjee; Lee, Haeyoun; Hwang, Yoon-Jung; Park, Sang Kun; Shin, Il Sheob; Kim, Se Hee; Ahn, Yul Kyun; Won, So Youn; Kim, Jungsun; Jin, Mina; Sohn, Seong-Han. | chloroplast genome
Allium
Dendranthema
Chrysanthemum
Pyrus |
| 983 | Resolving the evolutionary history of the Australian grass trees, Xanthorrhoea, using multiple next-generation seqeuncing techiques
Log in to add this item to your schedule | Phylogenomics | McLay, Todd; Doyle, Stephen; Tibbits, Josquin; Bayly, Mike. | RADseq
amplicon
marker development
Species delimitation |
| 1296 | Selection and validation of transcriptome-mined intronic primers for Fluidigm PCR and Illumina sequencing
Log in to add this item to your schedule | Phylogenomics | Jordon-Thaden, Ingrid; Gilman, Ian; Uribe-Convers, Simon; Chamala, Srikar; Tank, David; Martine, Chris. | transcriptomics
Fluidigm
introns
phylogenomics
marker development
solanaceae
Solanum
Draba
Brassicaceae |
| 732 | Species identification of the stemphylium blight pathogen in Saskatchewan
Log in to add this item to your schedule | Phylogenomics | Caudillo-Ruiz, Kiela B.; Banniza, Sabine. | stemphylium blight
Stemphylium botryosum
Phylogeny |
| 104 | Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment
Log in to add this item to your schedule | Phylogenomics | Stephens, Jessica; Rogers, Willie; Mason, Chase; Donovan, Lisa; Malmberg, Russell. | coalescent
gene capture
Phylogeny
phylogenomics
sunflower |
| 972 | The highly reduced plastid genome of mycoheterotrophic Sciaphila densiflora (Triuridaceae) is colinear with its close green relatives and under strong purifying selection
Log in to add this item to your schedule | Phylogenomics | Lam, Vivienne K.Y.; Soto Gomez, Marybel; Graham, Sean W.. | gene loss
genome reduction
mycoheterotrophy
Pandanales
Triuridaceae
purifying selection
heterotrophic plants
rate elevation |
| 1143 | Trees on trees: Resolving the hexaploid origin of coast redwood (Sequoia sempervirens) with phylotranscriptomics
Log in to add this item to your schedule | Phylogenomics | Scott, Alison; Stenz, Noah; Baum, David A.. | Polyploidy
gymnosperm
Cupressaceae
concordance analysis |
| 915 | Verdant: Automated Annotation, Alignment, and Phylogenetic Analysis for Whole Chloroplast Sequences
Log in to add this item to your schedule | Phylogenomics | Hartsock, Ryan H.; McKain, Michael; Wohl, Molly; Kellogg, Elizabeth. | plastid genome
phylogenomics
annotation |
