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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative 

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IDTitleSection/TopicAuthorsKeywords
11301KP and Angiosperm Phylogenomics
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Soltis, Pamela S.; Soltis, Douglas; Gitzendanner, Matthew.angiosperms
1KP
phylogenomics
2551000 Plants (1KP): Objectives and Achievements
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Wong, Gane Ka-Shu.
30Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Leebens-Mack, James H.; Ka-Shu Wong, Gane.Evolution
Comparative Genomics
616Curated phylogenomics and the first single-copy nuclear phylogeny of the ferns
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Rothfels, Carl; Li, Fay-Wei; Sigel, Erin M.; Huiet, Layne; Larsson, Anders; Graham, Sean W.; Wong, Gane Ka-Shu; Pryer, Kathleen M..codon models
curated phylogenomics
deep coalescence
divergence time
Equisetum
fern chronogram
incomplete lineage sorting
model selection
moderate data
monilophytes
single-copy nuclear gene
taxon sampling
300Gametophyte vs. sporophyte dominance and accompanying changes in gene content across land plants
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Sessa, Emily Butler; Szovenyi, Peter; Graham, Sean W.; Stevenson, Dennis; Wolf, Paul; Rothfels, Carl; Li, Fay-Wei; Wong, Gane Ka-Shu; Der, Joshua.gametophyte
sporophyte
tracheophyte
Bryophyte
gene expression
transcriptomics
659Gene family evolution across the green tree of life
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Chanderbali, Andre; Soltis, Douglas; Soltis, Pamela S..1KP
phylogenomics
1111Large-scale syntheses of plant relationships
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Burleigh, Gordon.phylogenomics
supertree
supermatrix
465Linking 1KP back to plant biology, some evo/devo possibilities
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Stevenson, Dennis; Graham, Sean W.; Wickett, Norm; Wong, Gane Ka-Shu.
1028Nuclear phylogenomics of the seed plants
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Puzey, Joshua; Zhan, Shing Hei; Chen, Tao; Deyholos, Michael; Leebens-Mack, James; Stevenson, Dennis; Thomas, Philip; Wong, Gane Ka-Shu; Graham, Sean W.; Mathews, Sarah.seed plant
gymnosperm
Phylogeny
species tree
Transcriptome
phylogenomics
1257Paleopolyploidy and the evolution of green plants
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Li, Zheng; Barker, Michael Shane.Polyploidy
genomics
Evolution
1370Parasitic and mycotrophic plants as foci for horizontal gene transfer: evidence from 1kp transcriptome data
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative dePamphilis, Claude D.; Wafula, Eric; Zhang, Yeting; Der, Joshua; Mirarab, Siavash; Ayyampalayam, Raj; Villegente, Matthieu; Wulff, Adrien; Fogliani, Bruno; Gateble, Gildas; Munzinger, Jerome; Westwood, Jim; Warnow, Tandy; Wong, Gane Ka-Shu; Leebens-Mack, James H..phylogenomics
horizontal gene transfer
parasitic plants
968Phylogenomics of the seedless land plants
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Zhan, Shing Hei; Rothfels, Carl; Wong, Gane Ka-Shu; Stevenson, Dennis; Graham, Sean W..Phylotranscriptomics
tracheophytes
euphyllophytes
ferns
lycophytes
mosses
liverworts
hornworts
600Phylogenomics of Viridiplantae using plastid genome sequence data
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Soltis, Douglas E.; Ruhfel, Brad; Feng, Guanqiao; Segovia-Salcedo, Claudia; Soltis, Pamela; Wong, Gane Ka-Shu; Gitzendanner, Matthew.plastid genomes
phylogenomics
green plants
1058Phylotranscriptomics of the Caryophyllales: paleopolyploidy, gene tree discordance and evolution of genes associated with adaptive changes
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Yang, Ya; Moore, Michael J.; Brockington, Samuel F.; Smith, Stephen A..Caryophyllales
1KP
RNA-Seq
phylogenomics
Transcriptome
Carnivorous plants
Polyploidy
reticulate evolution
661The 1KP Project and the Evolution of C4 Photosynthesis
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Sage, Rowan F.; Stata, Matthew; Kelly, Steve; Covshoff, Sarah J.; Wong, Gane Ka-Shu; Hibberd, Julian M..Evolution
C4 photosynthesis
Kranz anatomy
576The evolutionary consequences of losing sex in the evening primroses​
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Hollister, Jesse D..evening primrose
asexual reproduction
deleterious mutations
Population Genomics
phylogenomics
1117The power and perils of phylotranscriptomics deep in the green tree of life
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Botany 2015 Colloquium: Phylogenomics and the 1000 plants (1KP) initiative Leebens-Mack, James H.; Mirarab, Siavash; Nguyen, Nam-phuong; Wafula, Eric; Ayyampalayam, Raj; Der, Joshua; dePamphilis, Claude D.; Warnow, Tandy; Wong, Gane Ka-Shu.phylogenomics
Phylogenetics
transcriptomics
Viridiplantae

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