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| Session | Date/Time | Location | Title | Type | Authors | Keywords |
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Monday, July 27th |
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| PPY001 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species
Log in to add this item to your schedule | Poster: Phylogenomics | Roncal, Julissa; Guyot, Romain; Hamon, Perla; Nowak, Michael D.; Davis, Aaron; DeKochko, Alexandre. | Madagascar
LTR retrotransposons
Diversification
Coffea canephora
Mascarocoffea
REMAP |
| PPY002 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | RAD-seq strengthens phylogenetic resolution in Schoenoxiphium (Cyperaceae)
Log in to add this item to your schedule | Poster: Phylogenomics | Villaverde, Tamara; Maguilla, Enrique; Escudero, Marcial; Martin-Bravo, Santiago; Hipp, Andrew L.; Luceño, Modesto. | RADseq
phylogenomics
Carex
Phylogenetics
next generation sequencing
taxa circumscription
restriction site associated DNA |
| PPY003 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea, Cactaceae)
Log in to add this item to your schedule | Poster: Phylogenomics | Sanderson, Michael; Copetti, Dario; Burquez, Alberto; Bustamante, Enriquena; Charboneau, Joseph; Eguiarte, Luis E.; Kumar, Sudhir; McMahon, Michelle; Steele, Kelly; Wing, Rod; Yang, Tae-Jin; Lee, Hyun Oh; Lee, Junki; Zwickl, Derrick; Wojciechowski, Martin. | plastid genome
Cactaceae
phylogenomics |
| PPY004 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Verdant: Automated Annotation, Alignment, and Phylogenetic Analysis for Whole Chloroplast Sequences
Log in to add this item to your schedule | Poster: Phylogenomics | Hartsock, Ryan H.; McKain, Michael; Wohl, Molly; Kellogg, Elizabeth. | plastid genome
phylogenomics
annotation |
| PPY005 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Research on cytoplasmic genome characterization of chrysanthemum, Pyrus, Allium, and their relatives
Log in to add this item to your schedule | Poster: Phylogenomics | Lee, Jungho; Kwon, Mi; Park, Jihye; Lee, Minjee; Lee, Haeyoun; Hwang, Yoon-Jung; Park, Sang Kun; Shin, Il Sheob; Kim, Se Hee; Ahn, Yul Kyun; Won, So Youn; Kim, Jungsun; Jin, Mina; Sohn, Seong-Han. | chloroplast genome
Allium
Dendranthema
Chrysanthemum
Pyrus |
| PPY006 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Comparative analysis of plastid genomes of Orobanchaceae – adding up species from Korea
Log in to add this item to your schedule | Poster: Phylogenomics | Won, Hyosig; Lee, Jungho; Kim, Kyunghee; Yang, Tae-Jin; Kim, Soonok. | Comparative Genomics
plastid genome
parasitic plant
Orobanchaceae |
| PPY007 | July 27th 5:30 pm | Hall D/The Shaw Conference Centre | Selection and validation of transcriptome-mined intronic primers for Fluidigm PCR and Illumina sequencing
Log in to add this item to your schedule | Poster: Phylogenomics | Jordon-Thaden, Ingrid; Gilman, Ian; Uribe-Convers, Simon; Chamala, Srikar; Tank, David; Martine, Chris. | transcriptomics
Fluidigm
introns
phylogenomics
marker development
solanaceae
Solanum
Draba
Brassicaceae |
Tuesday, July 28th |
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| 32001 | July 28th 8:00 am | Salon 11/The Shaw Conference Centre | Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment
Log in to add this item to your schedule | Oral Paper | Stephens, Jessica; Rogers, Willie; Mason, Chase; Donovan, Lisa; Malmberg, Russell. | coalescent
gene capture
Phylogeny
phylogenomics
sunflower |
| 32002 | July 28th 8:15 am | Salon 11/The Shaw Conference Centre | Multiplexed-shotgun-genotyping data resolve phylogeny within a very recently-derived insular lineage
Log in to add this item to your schedule | Oral Paper | Mort, Mark; Crawford, Daniel J.; Kelly, John K.; Santos-Guerra, Arnoldo; Menezes de Sequeira, Miguel; Moura, Mónica; Caujapé-Castells, Juli. | Macaronesia
Asteraceae
genome sequencing
phylogenomics
Tolpis
Canary Islands |
| 32003 | July 28th 8:30 am | Salon 11/The Shaw Conference Centre | Protocol for Targeted Enrichment of Intron-Containing Sequence Markers for Recent Radiations: A Phylogenomic Example from Heuchera (Saxifragaceae)
Log in to add this item to your schedule | Oral Paper | Folk, Ryan; Mandel, Jennifer; Freudenstein, John. | phylogenomics
targeted enrichment
probe capture
Rapid radiation
heuchera
saxifragaceae
marker development |
| 32004 | July 28th 8:45 am | Salon 11/The Shaw Conference Centre | Phylogenomic Approaches in the Genus Heuchera (Saxifragaceae) Elucidate Deep Reticulation and Simultaneous Mitochondrial and Chloroplast Capture
Log in to add this item to your schedule | Oral Paper | Folk, Ryan; Mandel, Jennifer; Freudenstein, John. | phylogenomics
heuchera
saxifragaceae
hybridization
ancient reticulation
gene tree discord
phylogenomic discord
coalescent
concatenation |
| 32005 | July 28th 9:00 am | Salon 11/The Shaw Conference Centre | High-throughput sequencing of chloroplast genomes to resolve a rapidly evolving lineage - a case study in Chinese lianoid Gnetum (Gnetales)
Log in to add this item to your schedule | Oral Paper | Hou, Chen; Saunders, Richard M.K.; Wikström, Niklas; Strijk, Joeri S.; Rydin, Catarina. | High-throughput Sequencing
chloroplast genome
Gnetales
conservation biology |
| 32006 | July 28th 9:15 am | Salon 11/The Shaw Conference Centre | Next generation sampling: obtaining genomic data from large sets of herbarium specimens
Log in to add this item to your schedule | Oral Paper | Beck, James; Semple, John. | Solidago
Species delimitation
phylogenomics
genotyping by sequencing
herbarium specimen |
| 32007 | July 28th 9:30 am | Salon 11/The Shaw Conference Centre | RADseq phylogeography of Demosthenesia mandonii (Ericaceae:Vaccinieae), a blueberry from the Andean cloud forest
Log in to add this item to your schedule | Oral Paper | Ortiz, Edgardo M.; Juenger, Thomas; Simspon, Beryl. | Demosthenesia
Demosthenesia mandonii
Vaccinieae
Ericaceae
Phylogeography
RADseq
ddRAD
Pleistocene
cloud forest
Andes
Species Distribution Model |
| July 28th 9:45 am | Salon 11/The Shaw Conference Centre | Break
Log in to add this item to your schedule | | | |
| 32009 | July 28th 10:15 am | Salon 11/The Shaw Conference Centre | Genealogical concordance in Adansonia (Malvaceae) as inferred from hyb-seq data
Log in to add this item to your schedule | Oral Paper | Baum, David A.; Grover, Corrinne E.; Karimi, Nisa; Stenz, Noah; Gallagher, Joseph P.; Wendel, Jonathan. | Sequence capture
genealogical concordance |
| 32010 | July 28th 10:30 am | Salon 11/The Shaw Conference Centre | Creating an Updatable Community Resource for Chloroplast Phylogenomics
Log in to add this item to your schedule | Oral Paper | Payton, Adam; Burleigh, Gordon. | Phylogenetics
chloroplast |
| 32011 | July 28th 10:45 am | Salon 11/The Shaw Conference Centre | Assessing allelic diversity in polyploid complexes of Phlox (Polemoniaceae) using next-generation amplicon sequencing
Log in to add this item to your schedule | Oral Paper | Waselkov, Katherine; Fehlberg, Shannon D.; Prather, L. Alan; Wright, Bethany; Ferguson, Carolyn J.. | amplicon
hybridization
next generation sequencing
Phlox
Polemoniaceae
Polyploidy |
| 32012 | July 28th 11:00 am | Salon 11/The Shaw Conference Centre | Species identification of the stemphylium blight pathogen in Saskatchewan
Log in to add this item to your schedule | Oral Paper | Caudillo-Ruiz, Kiela B.; Banniza, Sabine. | stemphylium blight
Stemphylium botryosum
Phylogeny |
| 32013 | July 28th 11:15 am | Salon 11/The Shaw Conference Centre | Evolution of adaptations to drought, with an emphasis on photosynthetic physiology in Anacampseros (Anacampserotaceae, Caryophyllales) using targeted sequence capture
Log in to add this item to your schedule | Oral Paper | Moore, Abigail J.; de Vos, Jurriaan M.; Edwards, Erika J.. | Portulacineae
CAM
Anacampserotaceae
Sequence capture |
| 32014 | July 28th 11:30 am | Salon 11/The Shaw Conference Centre | Phylotranscriptomic insights into the radiation of mosses: gene family expansions and paleopolyploidy
Log in to add this item to your schedule | Oral Paper | Johnson, Matthew; Wickett, Norm; Medina, Rafael; Liu, Yang; Devos, Nicolas; Shaw, Jonathan; Goffinet, Bernard. | Bryophyte
Transcriptome
gene family
orthologs |
Wednesday, July 29th |
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| 73001 | July 29th 1:30 pm | Salon 9/The Shaw Conference Centre | Optimizing RADseq data for deep-scale phylogenomics: an example from Viburnum (Adoxaceae)
Log in to add this item to your schedule | Oral Paper | Robert Eaton, Deren Alexander; Spriggs, Beth; Park, Brian; Donoghue, Michael. | RADseq
supertree
discordance
Phylogeny
missing data
informativeness |
| 73002 | July 29th 1:45 pm | Salon 9/The Shaw Conference Centre | The highly reduced plastid genome of mycoheterotrophic Sciaphila densiflora (Triuridaceae) is colinear with its close green relatives and under strong purifying selection
Log in to add this item to your schedule | Oral Paper | Lam, Vivienne K.Y.; Soto Gomez, Marybel; Graham, Sean W.. | gene loss
genome reduction
mycoheterotrophy
Pandanales
Triuridaceae
purifying selection
heterotrophic plants
rate elevation |
| 73003 | July 29th 2:00 pm | Salon 9/The Shaw Conference Centre | Resolving the evolutionary history of the Australian grass trees, Xanthorrhoea, using multiple next-generation seqeuncing techiques
Log in to add this item to your schedule | Oral Paper | McLay, Todd; Doyle, Stephen; Tibbits, Josquin; Bayly, Mike. | RADseq
amplicon
marker development
Species delimitation |
| 73004 | July 29th 2:15 pm | Salon 9/The Shaw Conference Centre | High quality sequence data from poor quality herbarium DNAs through hybridization-based target enrichment
Log in to add this item to your schedule | Oral Paper | Villegas-Ramirez, Berenice; Yant, Levi; Xi, Zhenxiang; Webb, Campbell; Mathews, Sarah. | Alangium
species phylogeny
herbarium DNA
Sequence capture |
| 73005 | July 29th 2:30 pm | Salon 9/The Shaw Conference Centre | Phylogenomic approach to resolve the genus Pythium and the order Pythiales
Log in to add this item to your schedule | Oral Paper | Spies, Christoffel F. J.; Morisson, Hannah; Rintoul, Tara L.; Lévesque, C. André. | Oomycetes
Pythium
taxonomy
phytopathology |
| 73006 | July 29th 2:45 pm | Salon 9/The Shaw Conference Centre | Plastid genome degradation in fully and partially mycoheterotrophic eudicots
Log in to add this item to your schedule | Oral Paper | Darby, Hayley; Merckx, Vincent S.F.T.; Graham, Sean W.. | plastid genome
genome reduction
gene loss
mycoheterotrophy
heterotrophic plants
Gentianaceae
Polygalaceae |
| July 29th 3:00 pm | Salon 9/The Shaw Conference Centre | Break
Log in to add this item to your schedule | | | |
| 73008 | July 29th 3:45 pm | Salon 9/The Shaw Conference Centre | Trees on trees: Resolving the hexaploid origin of coast redwood (Sequoia sempervirens) with phylotranscriptomics
Log in to add this item to your schedule | Oral Paper | Scott, Alison; Stenz, Noah; Baum, David A.. | Polyploidy
gymnosperm
Cupressaceae
concordance analysis |
| 73009 | July 29th 4:00 pm | Salon 9/The Shaw Conference Centre | Canceled Genome evolution in Parasitaxus usta, a podocarp conifer with a unique form of heterotrophy
Log in to add this item to your schedule | Oral Paper | Gerelle, Wesley; Lam, Vivienne K.Y.; Wulff, Adrien; Leebens-Mack, James H.; dePamphilis, Claude D.; Wong, Gane Ka-Shu; Graham, Sean W.. | mycoheterotrophy
heterotrophy
Transcriptome
Evolution
1KP
Gene ontology
Conifer |
| 73010 | July 29th 4:15 pm | Salon 9/The Shaw Conference Centre | How Many Plastomes Does it Take to Estimate the Matrilineal Phylogeny of Asclepias?
Log in to add this item to your schedule | Oral Paper | Fishbein, Mark; Straub, Shannon; Hansen, Kimberley; Cronn, Richard C.; Liston, Aaron. | milkweed
phylogenomics
Apocynaceae
data partition
model selection
classification |
| 73011 | July 29th 4:30 pm | Salon 9/The Shaw Conference Centre | How much plastome data is enough to resolve the backbone of a phylogeny in a rapid radiation of species? The genus Anthurium (Araceae) as a case study
Log in to add this item to your schedule | Oral Paper | Carlsen, Monica Maria. | Anthurium
Araceae
Genome skimming
High-throughput Sequencing
plastomes
phylogenomics |
| 73012 | July 29th 4:45 pm | Salon 9/The Shaw Conference Centre | A phylogeny of the world’s oaks
Log in to add this item to your schedule | Oral Paper | Hipp, Andrew L.; Manos, Paul; McVay, John D.; Cavender-Bares, Jeannine; Gonzalez Rodriguez, Antonio; Romero-Severson, Jeanne; Hahn, Marlene; Brown, Bethany H.; Budaitis, Breane; Deng, Min; Grimm, Guido; Fitzek, Elisabeth; Cronn, Richard C.; Jennings, Tara L.; Avishai, Michael; Simeone, Marco C.. | AFLP
Cyclobalanopsis
Fagaceae
next-generation sequencing
phylogenomics
Quercus
RADseq
restriction site associated DNA |
